Table of Contents
Methylation analysis using (PMAAs) On phosphate containing LOS using dimsyl sodium
(CH3SOCH2--Na+)
Introduction
Reagents
- Anhydrous hydrogen fluoride
- Dimsyl sodium
- Methyl iodide
- Acetonitrile
- Acetonitrile, 10% in water
- Ethanol
- Methanol
- Sodium borohydride, 0.25 M in 1 M NH3(aq)
- Ammonia 1 M
- Acetic acid,10% in methanol
- Acetic acid 50%
- Acetic anhydride
- Pyridine
Procedure
- Transfer the dry sample (ca 1.5 mg) to a serum flask (5 mL). Add a 1 cm magnetic rod, flush the flask with N2, and seal the flask with a rubber septum.
- From now on keep the flask in a fume hood due to odor and toxic fumes. Add 0.5 mL of dry DMSO by putting two needles through the septum. Stir the sample for 30 min.
- Add 0.25 mL dimsyl sodium. Stir at room temperature for at least 0.5 h.
- Freeze the sample and add 0.5 mL MeI. Stir when melted for ca 0.5 h. Excess pressure may have to be relieved shortly with needle.
- Remove septum and take away MeI by pushing a needle through the septum and applying vacuum. Dilute then with an equal volume of H2O
- Sep-Pak
- Precondition: 10 mL EtOH, 2 x 2 mL H2O
- Apply sample in DMSO/H2O 1:1
- Rinse vial with 1 mL DMSO/H2O 1:1
- Rinse SepPak: 8 mL H2O, 8 mL 15% CH3CN, keep the washings until you know where your sample is.
- Elute methylated carbohydrate: 2 mL CH3CN , 2 mL EtOH into a 13 x 100 mm screw cap tube. Blow down the last 4 mL to dryness.
- Transfer dried sample (ca 0.2 mg) to the HF reaction vessel together with a dry mini-size magnetic rod. Dry the sample thoroughly in a dessicator and with a vacuum pump.
- Cool with CO2+ethanol or liquid N2, the reaction vessel and heat, with a blow dryer, the HF supply vessel (Kel-F) until the required volume has distilled over (ca 0.5 mL). Leave for 3 h at room temperature.
- Evaporate solvent by applying vacuum slowly to the reaction vessel and when it looks dry add 1 mL MeOH, evaporate. Transfer the reaction mixture with 0.5 mL 50% aqueous HOAc and heat at 80°C for 18 h. Evaporate to dryness, add 0.5 mL MeOH and evaporate again.
- Reduce with 0.3 mL fresh solution of NaBD4 (NaBH4) in 1M NH3(aq) for 30 min at 20° (or 1M NH3(aq) in EtOH)
- Quench with 0.5 mL 10% HOAc in MeOH, evaporate to dryness. Add 0.5 mL 10% HOAc in MeOH and evaporate to dryness. Repeat once or twice. Add 0.5 mL MeOH and evaporate to dryness. Repeat once or twice.
- Acetylate with 100 µL Ac2O and 100 µL pyridine at 80°C 2 h or overnight.
- Let the solution cool, evaporate solvent and add 1 mL toluene, evaporate.
- Partition between 0.5 mL H2O and 0.5 mL EtOAc, transfer organic phase to sample tube. Repeat. Concentrate to ca 0.2 mL, filter through glass down to sample tube.