Preprints and postprints

Recent Publications by the Group

Engström O, Mobarak H, Ståhle J, Widmalm G. Conformational Dynamics and Exchange Kinetics of N-Formyl and N-Acetyl Groups Substituting 3-Amino-3,6-Dideoxy-α-D-Galactopyranose, a Sugar Found in Bacterial O-Antigen Polysaccharides. J Phys Chem B. 2017 Sep 21;.

Prestegard JH, Liu J, Widmalm G, Varki A, Cummings RD, Esko JD, Stanley P, Hart GW, Aebi M, Darvill AG, Kinoshita T, Packer NH, Prestegard JH, Schnaar RL, Seeberger PH. Oligosaccharides and Polysaccharides . 2015;.

Casillo A, Ståhle J, Parrilli E, Sannino F, Mitchell DE, Pieretti G, Gibson MI, Marino G, Lanzetta R, Parrilli M, Widmalm G, Tutino ML, Corsaro MM. Erratum to: Structural characterization of an all-aminosugar-containing capsular polysaccharide from Colwellia psychrerythraea 34H. Antonie Van Leeuwenhoek. 2017 Jul 11;.

Angles d'Ortoli T, Hamark C, Widmalm G. Structure-Reactivity Relationships of Conformationally Armed Disaccharide Donors and Their Use in the Synthesis of a Hexasaccharide Related to the Capsular Polysaccharide from Streptococcus pneumoniae Type 37. J Org Chem. 2017 Aug 4;82(15):8123-8140.

Blasco P, Patel DS, Engström O, Im W, Widmalm G. Conformational Dynamics of the Lipopolysaccharide from Escherichia coli O91 Revealed by Nuclear Magnetic Resonance Spectroscopy and Molecular Simulations. Biochemistry. 2017 Jul 25;56(29):3826-3839.

Shen Z, Mobarak H, Li W, Widmalm G, Yu B. Synthesis of β-(1→2)-Linked 6-Deoxy-l-altropyranose Oligosaccharides via Gold(I)-Catalyzed Glycosylation of an ortho-Hexynylbenzoate Donor. J Org Chem. 2017 Mar 17;82(6):3062-3071.

Casillo A, Ståhle J, Parrilli E, Sannino F, Mitchell DE, Pieretti G, Gibson MI, Marino G, Lanzetta R, Parrilli M, Widmalm G, Tutino ML, Corsaro MM. Structural characterization of an all-aminosugar-containing capsular polysaccharide from Colwellia psychrerythraea 34H. Antonie Van Leeuwenhoek. 2017 Feb 4;.

Hamark C, Berntsson RP, Masuyer G, Henriksson LM, Gustafsson R, Stenmark P, Widmalm G. Glycans Confer Specificity to the Recognition of Ganglioside Receptors by Botulinum Neurotoxin A. J Am Chem Soc. 2017 Jan 11;139(1):218-230.

Perepelov AV, Wang Q, Filatov AV, Xia X, Shashkov AS, Weintraub A, Widmalm G, Wang L, Knirel YA. Corrigendum to "Structures and gene clusters of the closely related O-antigens of Escherichia coli O46 and O134, both containing d-glucuronoyl-d-allothreonine" [Carbohydr. Res. 409 (2015) 20-24]. Carbohydr Res. 2016 Dec 21;436:54.

Patel DS, Park S, Wu EL, Yeom MS, Widmalm G, Klauda JB, Im W. Influence of Ganglioside GM1 Concentration on Lipid Clustering and Membrane Properties and Curvature. Biophys J. 2016 Nov 1;111(9):1987-1999.

Berglund J, Angles d'Ortoli T, Vilaplana F, Widmalm G, Bergenstråhle-Wohlert M, Lawoko M, Henriksson G, Lindström M, Wohlert J. A molecular dynamics study of the effect of glycosidic linkage type in the hemicellulose backbone on the molecular chain flexibility. Plant J. 2016 Oct;88(1):56-70.

Kim S, Patel DS, Park S, Slusky J, Klauda JB, Widmalm G, Im W. Bilayer Properties of Lipid A from Various Gram-Negative Bacteria. Biophys J. 2016 Oct 18;111(8):1750-1760.

Lisacek F, Mariethoz J, Alocci D, Rudd PM, Abrahams JL, Campbell MP, Packer NH, Ståhle J, Widmalm G, Mullen E, Adamczyk B, Rojas-Macias MA, Jin C, Karlsson NG. Databases and Associated Tools for Glycomics and Glycoproteomics. Methods Mol Biol. 2017;1503:235-264.

Fontana C, Zaccheus M, Weintraub A, Ansaruzzaman M, Widmalm G. Structural studies of a polysaccharide from Vibrio parahaemolyticus strain AN-16000. Carbohydr Res. 2016 Sep 2;432:41-9.

Yang M, Angles d'Ortoli T, Säwén E, Jana M, Widmalm G, MacKerell AD. Delineating the conformational flexibility of trisaccharides from NMR spectroscopy experiments and computer simulations. Phys Chem Chem Phys. 2016 Jul 28;18(28):18776-94.

Kuttel MM, Ståhle J, Widmalm G. CarbBuilder: Software for building molecular models of complex oligo- and polysaccharide structures. J Comput Chem. 2016 Aug 15;37(22):2098-105.

Shashkov AS, Zhang W, Perepelov AV, Weintraub A, Liu B, Widmalm G, Knirel YA. Structure of the O-polysaccharide of Escherichia coli O132. Carbohydr Res. 2016 Jun 2;427:44-7.

Kang Y, Gohlke U, Engström O, Hamark C, Scheidt T, Kunstmann S, Heinemann U, Widmalm G, Santer M, Barbirz S. Bacteriophage Tailspikes and Bacterial O-Antigens as a Model System to Study Weak-Affinity Protein-Polysaccharide Interactions. J Am Chem Soc. 2016 Jul 27;138(29):9109-18.

Muheim C, Bakali A, Engström O, Wieslander Å, Daley DO, Widmalm G. Identification of a Fragment-Based Scaffold that Inhibits the Glycosyltransferase WaaG from Escherichia coli. Antibiotics (Basel). 2016 Jan 28;5(1).

Kadeřávek P, Zapletal V, Fiala R, Srb P, Padrta P, Přecechtělová JP, Šoltésová M, Kowalewski J, Widmalm G, Chmelík J, Sklenář V, Žídek L. Spectral density mapping at multiple magnetic fields suitable for (13)C NMR relaxation studies. J Magn Reson. 2016 May;266:23-40.

Dalheim MØ, Arnfinnsdottir NB, Widmalm G, Christensen BE. The size and shape of three water-soluble, non-ionic polysaccharides produced by lactic acid bacteria: A comparative study. Carbohydr Polym. 2016 May 20;142:91-7.

Patel DS, Re S, Wu EL, Qi Y, Klebba PE, Widmalm G, Yeom MS, Sugita Y, Im W. Dynamics and Interactions of OmpF and LPS: Influence on Pore Accessibility and Ion Permeability. Biophys J. 2016 Feb 23;110(4):930-8.

Fontana C, Conde-Álvarez R, Ståhle J, Holst O, Iriarte M, Zhao Y, Arce-Gorvel V, Hanniffy S, Gorvel JP, Moriyón I, Widmalm G. Structural Studies of Lipopolysaccharide-defective Mutants from Brucella melitensis Identify a Core Oligosaccharide Critical in Virulence. J Biol Chem. 2016 Apr 1;291(14):7727-41.

Pendrill R, Engström O, Volpato A, Zerbetto M, Polimeno A, Widmalm G. Flexibility at a glycosidic linkage revealed by molecular dynamics, stochastic modeling, and (13)C NMR spin relaxation: conformational preferences of α-L-Rhap-α-(1 → 2)-α-L-Rhap-OMe in water and dimethyl sulfoxide solutions. Phys Chem Chem Phys. 2016 Jan 28;18(4):3086-96.

Chen M, Pendrill R, Widmalm G, Brady JW, Wohlert J. Molecular Dynamics Simulations of the Ionic Liquid 1-n-Butyl-3-Methylimidazolium Chloride and Its Binary Mixtures with Ethanol. J Chem Theory Comput. 2014 Oct 14;10(10):4465-79.

Senchenkova SN, Zhang Y, Perepelov AV, Guo X, Shashkov AS, Weintraub A, Liu B, Widmalm G, Knirel YA. Structure and gene cluster of the O-antigen of Escherichia coli O165 containing 5-N-acetyl-7-N-[(R)-3-hydroxybutanoyl]pseudaminic acid. Glycobiology. 2016 Apr;26(4):335-42.

Thorsheim K, Siegbahn A, Johnsson RE, Stålbrand H, Manner S, Widmalm G, Ellervik U. Chemistry of xylopyranosides. Carbohydr Res. 2015 Dec 11;418:65-88.

Shashkov AS, Wang T, Perepelov AV, Weintraub A, Liu B, Widmalm G, Knirel YA. Structure elucidation and biosynthesis gene cluster organization of the O-antigen of Escherichia coli O170. Carbohydr Res. 2015 Nov 19;417:11-4.

Kapla J, Engström O, Stevensson B, Wohlert J, Widmalm G, Maliniak A. Molecular dynamics simulations and NMR spectroscopy studies of trehalose-lipid bilayer systems. Phys Chem Chem Phys. 2015 Sep 14;17(34):22438-47.

Perepelov AV, Shashkov AS, Guo X, Filatov AV, Weintraub A, Widmalm G, Knirel YA. Structure and genetics of the O-antigen of Escherichia coli O169 related to the O-antigen of Shigella boydii type 6. Carbohydr Res. 2015 Sep 23;414:46-50.

 
publications.txt · Last modified: 2016/09/30 10:55 by gw